PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G104200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LBD
Protein Properties Length: 179aa    MW: 19736.6 Da    PI: 6.8433
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G104200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.91.5e-282103197
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C+vlr++C+++Cvl+ ++      ++q++++a+++k FG+sn++++++a++e +r+++++sl+yeA+ r+ +Pv G++g+i++++++ 
  Aqcoe5G104200.1.p   2 SCSGCRVLRKRCSESCVLRHCLqwienHESQAHATAFLAKYFGRSNLISFISAVHEIHRPALFRSLLYEACGRTLNPVDGVIGLIWTGNWRA 93 
                        6*********************9998777889************************************************************ PP

             DUF260  88 eqlkaelall 97 
                        +++++e++l 
  Aqcoe5G104200.1.p  94 CHMAVETVLS 103
                        **99998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.231107IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MSCSGCRVLR KRCSESCVLR HCLQWIENHE SQAHATAFLA KYFGRSNLIS FISAVHEIHR  60
PALFRSLLYE ACGRTLNPVD GVIGLIWTGN WRACHMAVET VLSGDIIQPM SIPAMNFCNN  120
LEAESNINLR PCLSSEISAK EETTKTSLID SGNSATMSFE SSEVGHYVGE PKLLNLFV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272301.11e-57PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9SZE86e-54LBD39_ARATH; LOB domain-containing protein 39
TrEMBLD6MK436e-58D6MK43_9ASPA; Transcription factor (Fragment)
STRINGGLYMA14G09750.26e-56(Glycine max)
STRINGSolyc02g092550.2.13e-55(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.14e-55LOB domain-containing protein 39